MyGene.info clients: mygene.R and mygene.py

Tool:MyGene.info clients: mygene.R and mygene.py

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9.5 years ago

adam.maikai ▴ 520

MyGene.info is a gene query and annotation web service that provides the most up to date annotations available from several resources. This tool is especially useful for ID conversion and retrieval of several annotations at once and supports every species from NCBI and Ensembl. Learn more about capabilities.

MyGene.info has released two clients for programmatic access. An R/Bioconductor package and a python module: (bioC vignette, python package documentation, usage)

The most recent manuscript is available here.

NGS annotation python R • 2.5k views

ADD COMMENT • link updated 16 months ago by Ram 43k • written 9.5 years ago by adam.maikai ▴ 520

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Kindly please how can we define the pathway for specific genes using R, please I used KEGGREST but it does not work? Kindly can you help me.

ADD REPLY • link updated 16 months ago by Ram 43k • written 8.8 years ago by naving2uk ▴ 10

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Can you provide more details on what you're trying to accomplish? I'm not sure I understand "define the pathway for specific genes"..

ADD REPLY • link updated 16 months ago by Ram 43k • written 8.8 years ago by Andrew Su 4.9k

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