Question: CNV and Clinical Data for Cancer - Alternative to TCGA or ICGC
2
gravatar for dirigible2012
4.4 years ago by
dirigible2012310
European Union
dirigible2012310 wrote:

Hello all,

Last time I asked about cancer datasets on here somebody very kindly directed me to the TCGA, which was perfect! I'm now trying to confirm my results with another dataset. Does anybody know of any cancer datasets which include both CNV and clinical data? (I don't need very complicated clinical data, just survival time.)

I've had a look at the ICGC, but they strangely seem to be missing survival time data for breast cancer, which is one of the cancers I definitely need to confirm.

Thanks,

Stephanie

 

cancer cnv tcga icgc • 2.1k views
ADD COMMENTlink modified 4.4 years ago by Obi Griffith17k • written 4.4 years ago by dirigible2012310
3
gravatar for Obi Griffith
4.4 years ago by
Obi Griffith17k
Washington University, St Louis, USA
Obi Griffith17k wrote:

Will array-based CNVs work?  If so, I suggest you check out METABRIC dataset. It has a large number of breast cancer profiles and also have survival data. You will need to apply for access though I think:

https://www.synapse.org/#!Synapse:syn1688369

ADD COMMENTlink written 4.4 years ago by Obi Griffith17k
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