i have a basic question: I am using default parameter to run the bwa to align to a a reference geneome. I would like to know if bam represents all the reads used in the paired end fastq file? (including reads from pairs where one mate maps, and where no mates map). Why Iam asking this is, I need to rebuild the fastq using bam?
Question: Does A Bwa Bam File Contain Entries For All Unaligned Paired-End Reads?
7.5 years ago by
Rm ♦ 7.8k
Rm ♦ 7.8k wrote:
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