Question: TO BLAST LARGE QUERY SEQUENCE AT ONE TIME
0
gravatar for dinesh
4.2 years ago by
dinesh50
India
dinesh50 wrote:

hi community, i have near 4000 query sequences that i need to BLAST inorder to find homology. to do this should i need to blast my query sequence 4000 times individually one by one or we have any alternate way to blast all query sequences all at one time.(using standalone offline)

 

thanks in advance

blast • 2.2k views
ADD COMMENTlink modified 4.2 years ago by Ashutosh Pandey11k • written 4.2 years ago by dinesh50
2
gravatar for Ashutosh Pandey
4.2 years ago by
Philadelphia
Ashutosh Pandey11k wrote:

http://www.ncbi.nlm.nih.gov/books/NBK1762/

http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download

You can put all of your 4000 sequences in a fasta file and give it as an input. 

ADD COMMENTlink modified 4.2 years ago • written 4.2 years ago by Ashutosh Pandey11k
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