How to convert phylip tree format in text format to png image with perl.
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2
Entering edit mode
7.4 years ago
Naren ▴ 900
((raccoon:19.19959,bear:6.80041):0.84600,((sea_lion:11.99700, seal:12.00300):7.52973,((monkey:100.85930,cat:47.14069):20.59201, weasel:18.87953):2.09460):3.87382,dog:25.46154);

Suppose this is my tree. I want to convert it to png image.

I tried Bio::Tree::Tree module but it writes wrong nodes in svg file.

code:

use Bio::TreeIO;
use SVG::Graph;

my $in = new Bio::TreeIO(-file => 'DATA',
                         -format => 'newick');

my $out = new Bio::TreeIO(-file => '>mytree.svg',
                            -format => 'svggraph');
while(  $tree = $in->next_tree ) {
    $out->write_tree($tree);
}

system(convert mytree.svg svg2.png);
phylip phylogeny • 3.1k views
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Entering edit mode

I tried Bio::Tree::Tree module but it writes wrong nodes in svg file.

Show us the code please.

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@pierre I added my code.

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0
Entering edit mode
7.4 years ago

The old TreeFam API has some code to draw a tree image in PNG format from a NH/NHX representation.

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