Question: Looking for breast cancer genes databases
0
gravatar for jack
4.5 years ago by
jack760
Germany
jack760 wrote:

Hi all,

 

I'm looking for databases which contain list of genes which are involved or contribute to breast cancer.

would someone help me ?

 

 

ADD COMMENTlink modified 4.5 years ago by iraun3.6k • written 4.5 years ago by jack760

This tutorial describes several cancer data portals that might be relevant to this post: Exploring cancer mutation data portals

ADD REPLYlink written 4.3 years ago by Malachi Griffith17k
1
gravatar for iraun
4.5 years ago by
iraun3.6k
Norway
iraun3.6k wrote:

I suggest you to give a try to Integrative OncoGenomics (IntOGen) database: http://www.intogen.org/.
It is a resource that integrates multidimensional OncoGenomics Data for the identification of genes and groups of genes (biological modules) involved in cancer development.
You can find genes and mutations related with the cancer site you want, in your case breast.
http://www.intogen.org/web/mutations/v04/search?2

Hope it helps.

ADD COMMENTlink written 4.5 years ago by iraun3.6k

Hello everyone,

Is anyone having idea of curating pathways/genes which are responsible for induced angiogenesis via monocytes/tumor associated macrophages?

Basically I am constructing protein-protein interaction network. For that, which is the best way to retrieve proteins/genes.

  1. Vegf induced monocyte promoting angiogenesis signaling pathway?

  2. Or only vegf downstream signaling pathways which are responsible for angiogenesis ?

And how to retrieve the genes/pathways from diff databases and how to curate the proteins which are only responsible for vegf induced monocytes in cancer angiogenesis?

Thank u in advance.

ADD REPLYlink written 2.8 years ago by sharathbio1230
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