Question: GWAS dataset: SNPs with association p-value
0
gravatar for yliueagle
4.6 years ago by
yliueagle220
France
yliueagle220 wrote:

I want to download some GWAS datasets (1 will be ok), that it should contain mainly the following information: 1) the SNPs; 2) the SNP p-vlaue (by single SNP association analysis, meta-analysis, etc). My objective is to try this dataset for gene set enrichment analysis (GSEA). Any resources?

dataset gwas • 3.2k views
ADD COMMENTlink modified 4.6 years ago by willgilks260 • written 4.6 years ago by yliueagle220

In 2016-2017, GRASP had added the public posting of many GWAS summary statistics and continues to add more. See: https://grasp.nhlbi.nih.gov/FullResults.aspx

ADD REPLYlink written 2.4 years ago by johnsonad20
0
gravatar for Emily_Ensembl
4.6 years ago by
Emily_Ensembl18k
EMBL-EBI
Emily_Ensembl18k wrote:

Have you looked at the GWAS catalogue?

ADD COMMENTlink written 4.6 years ago by Emily_Ensembl18k
0
gravatar for willgilks
4.6 years ago by
willgilks260
United Kingdom
willgilks260 wrote:

As of January 2015, GWAS datasets for which the association p-values and effect sizes are available:

DIAGRAM consortium (diabetes) http://diagram-consortium.org/downloads.html  

GIANT consortium (human body size) http://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium

PGC (psychiatric) http://www.med.unc.edu/pgc/downloads

Not sure if there any more.

 

ADD COMMENTlink written 4.6 years ago by willgilks260
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 772 users visited in the last hour