I want to download some GWAS datasets (1 will be ok), that it should contain mainly the following information: 1) the SNPs; 2) the SNP p-vlaue (by single SNP association analysis, meta-analysis, etc). My objective is to try this dataset for gene set enrichment analysis (GSEA). Any resources?
As of January 2015, GWAS datasets for which the association p-values and effect sizes are available:
DIAGRAM consortium (diabetes) http://diagram-consortium.org/downloads.html
GIANT consortium (human body size) http://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium
PGC (psychiatric) http://www.med.unc.edu/pgc/downloads
Not sure if there any more.