GWAS dataset: SNPs with association p-value
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9.1 years ago
yliueagle ▴ 290

I want to download some GWAS datasets (1 will be ok), that it should contain mainly the following information: 1) the SNPs; 2) the SNP p-vlaue (by single SNP association analysis, meta-analysis, etc). My objective is to try this dataset for gene set enrichment analysis (GSEA). Any resources?

GWAS dataset • 4.6k views
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In 2016-2017, GRASP had added the public posting of many GWAS summary statistics and continues to add more. See: https://grasp.nhlbi.nih.gov/FullResults.aspx

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9.1 years ago
Emily 23k

Have you looked at the GWAS catalogue?

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9.1 years ago
willgilks ▴ 360

As of January 2015, GWAS datasets for which the association p-values and effect sizes are available:

DIAGRAM consortium (diabetes)

GIANT consortium (human body size)

PGC (psychiatric)

Not sure if there any more.

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