I need some advice.I never realized a genome assembly before. I have to make a de novo genome assembly on a large genome (2.5 gb) with short illumina paired end reads of 150 pb.
I inquired about the different assemblers but none match my needs. there is always a criterion that blocks (for example Abyss, ALLPATHS-LG and SOAPdenovo work with much shorter reads while others like Spades are not working for the genomes of this size).
Do you have an idea of what short-read de novo assembler I could use? which would give the best results?