Forum: Spatial and temporal heterogeneity
3
gravatar for al3n70rn
4.2 years ago by
al3n70rn100
France
al3n70rn100 wrote:

I think it would be really useful to have a list of packages / tools that allow to estimate tumor heterogeneity (spatial and temporal) and clonal analysis.

Some examples:

 

TITAN : http://www.ncbi.nlm.nih.gov/pubmed/?term=25060187

MEDICC : http://www.ncbi.nlm.nih.gov/pubmed/24743184

THetA : http://www.ncbi.nlm.nih.gov/pubmed/23895164

SciClone : http://www.ncbi.nlm.nih.gov/pubmed/25102416

rec-BTP : http://www.ncbi.nlm.nih.gov/pubmed/24932008

EXPANDS : http://www.ncbi.nlm.nih.gov/pubmed/24177718

PhyloSub : http://www.ncbi.nlm.nih.gov/pubmed/24484323

TuMult : http://www.ncbi.nlm.nih.gov/pubmed/20649963

 

Other suggestions?

 

rna-seq next-gen forum • 1.2k views
ADD COMMENTlink modified 4.2 years ago by Devon Ryan89k • written 4.2 years ago by al3n70rn100

Moved to forum, where it's likely more appropriate.
 

ADD REPLYlink written 4.2 years ago by Devon Ryan89k
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