bed file of gene body fro hg19

Question

[kanwarjag]

Can some one direct me where can I find gene body coordinates as bed file (other format) for Hg19. I want to use it in IGV

Answer 1

[Alex Reynolds]

One way via the command line:

$ wget -qO- ftp://ftp.sanger.ac.uk/pub/gencode/release_21/gencode.21.annotation.gtf.gz \
    | gunzip --stdout - \
    | gtf2bed - \
    > gencode.21.bed​

[Rm]

Just a clarification: Gencode 21 is GRCh38 :

Gencode 19 supports GRCH37 (~/hg19/) http://www.gencodegenes.org/releases/