Best Bioinformatic And Molecular Biology Software Package
5
8
Entering edit mode
10.0 years ago

Hi,

In my lab, we want a software package to facilitate the link between bioinformatic and molecular biology. So a soft which permits to view and edit sequences, the annotation, restriction sites, primer design, alignment, ... So a program that covers a lot of the work of molecular biologists.

There are some software available, but I don't know them well :

  • Geneious
  • Gene Designer
  • UGene
  • GBench
  • ...

Thanks a lot,

N.----

software molecular viewer subjective • 5.6k views
ADD COMMENT
0
Entering edit mode

for information, It has to be cross platform (windows,linux and mac)

ADD REPLY
1
Entering edit mode
10.0 years ago
Graslevy ▴ 240

I have used CLC genomics workbench and it is perfect for almost any bioinformatics task. There are also numerous add-in options to increase fuctionality. This will be my pick over Geneious.

ADD COMMENT
0
Entering edit mode

Same experience here.

ADD REPLY
1
Entering edit mode
10.0 years ago

People in my lab use: ApE http://biologylabs.utah.edu/jorgensen/wayned/ape/

At the end of the 90th (...) I was using the venerable but powerful DNA Strider.

alt text

(image src: http://people.musc.edu/~hazards/WebBioInformatics/Nucleic_Acid_Analysis_Resources.htm )

ADD COMMENT
0
Entering edit mode
7.8 years ago
5heikki 10.0k

Geneious is probably a good choice for people who aren't that good with computers. More generally, I don't think there's a single package that does the job best, rather there are best specific tools for each task.

ADD COMMENT
0
Entering edit mode
7.8 years ago
jackuser1979 ▴ 880

Geneious or CLC workbench will be a good choice.

ADD COMMENT
0
Entering edit mode
6.9 years ago

ANy one can explain me the difference between quality-base variant caller or probablistic?

ADD COMMENT
1
Entering edit mode

This is a really old thread and this question is unrelated. Please post this as a new post (as type: question). Thanks.

ADD REPLY

Login before adding your answer.

Traffic: 1638 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6