Question: Best Bioinformatic And Molecular Biology Software Package
8
gravatar for Nicolas Rosewick
8.7 years ago by
Belgium, Brussels
Nicolas Rosewick8.8k wrote:

Hi,

In my lab, we want a software package to facilitate the link between bioinformatic and molecular biology. So a soft which permits to view and edit sequences, the annotation, restriction sites, primer design, alignment, ... So a program that covers a lot of the work of molecular biologists.

There are some software available, but I don't know them well :

  • Geneious
  • Gene Designer
  • UGene
  • GBench
  • ...

Thanks a lot,

N.----

ADD COMMENTlink modified 5.6 years ago by sara.barbosa.salazar0 • written 8.7 years ago by Nicolas Rosewick8.8k

for information, It has to be cross platform (windows,linux and mac)

ADD REPLYlink written 8.7 years ago by Nicolas Rosewick8.8k
1
gravatar for Graslevy
8.7 years ago by
Graslevy240
UK
Graslevy240 wrote:

I have used CLC genomics workbench and it is perfect for almost any bioinformatics task. There are also numerous add-in options to increase fuctionality. This will be my pick over Geneious.

ADD COMMENTlink written 8.7 years ago by Graslevy240

Same experience here.

ADD REPLYlink written 8.7 years ago by Fabian Bull1.3k
1
gravatar for Pierre Lindenbaum
8.7 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum129k wrote:

People in my lab use: ApE http://biologylabs.utah.edu/jorgensen/wayned/ape/

At the end of the 90th (...) I was using the venerable but powerful DNA Strider.

alt text

(image src: http://people.musc.edu/~hazards/WebBioInformatics/Nucleic_Acid_Analysis_Resources.htm )

ADD COMMENTlink written 8.7 years ago by Pierre Lindenbaum129k
0
gravatar for 5heikki
6.6 years ago by
5heikki8.9k
Finland
5heikki8.9k wrote:

Geneious is probably a good choice for people who aren't that good with computers. More generally, I don't think there's a single package that does the job best, rather there are best specific tools for each task.

ADD COMMENTlink written 6.6 years ago by 5heikki8.9k
0
gravatar for jackuser1979
6.6 years ago by
jackuser1979870
US
jackuser1979870 wrote:

Geneious or CLC workbench will be a good choice.

ADD COMMENTlink written 6.6 years ago by jackuser1979870
0
gravatar for sara.barbosa.salazar
5.6 years ago by
sara.barbosa.salazar0 wrote:

ANy one can explain me the difference between quality-base variant caller or probablistic?

ADD COMMENTlink written 5.6 years ago by sara.barbosa.salazar0
1

This is a really old thread and this question is unrelated. Please post this as a new post (as type: question). Thanks.

ADD REPLYlink written 5.6 years ago by SES8.4k
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