Question: Prediction of operon in bacterial genomes
0
gravatar for dago
3.8 years ago by
dago2.5k
Germany
dago2.5k wrote:

Is there any tool available for predicting operon in whole bacterial genomes?

I found many papers on the topic, but not tools available.

 


 

operon annotation genome • 1.7k views
ADD COMMENTlink modified 2.9 years ago by 235168855910 • written 3.8 years ago by dago2.5k
1
gravatar for 2351688559
2.9 years ago by
235168855910
China
235168855910 wrote:

You can try DOOR 2.0 database

ADD COMMENTlink written 2.9 years ago by 235168855910

This looks indeed interesting

ADD REPLYlink written 2.9 years ago by dago2.5k
0
gravatar for jing
3.8 years ago by
jing10
Ireland
jing10 wrote:

Have you tried Prodigal?

ADD COMMENTlink written 3.8 years ago by jing10

well, as far as I know Prodigal is a Gene finder tool, not an operon finding tool.

ADD REPLYlink written 3.8 years ago by dago2.5k

Hi! I read your post about COG annotation and operon prediction. Now I 'm facing the same problem. Have you got your problems solved? I guess I may need your help! Thanks!

ADD REPLYlink written 3.3 years ago by 235168855910

Hi, sorry for the late answer. I guess that looking at the questions on biostars you can find the answer you need. Otherwise you can open another post and I am sure you will get help.

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by dago2.5k

Hi! How are you?

Have you got your operon predicted? Would you mind telling me what you are going to do with the predictions? I have got my predictions, but I have difficulties on how to analyze them.

Thank you!

ADD REPLYlink written 2.9 years ago by 235168855910
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