Prediction of operon in bacterial genomes
2
0
Entering edit mode
7.3 years ago
dago ★ 2.7k

Is there any tool available for predicting operon in whole bacterial genomes?

I found many papers on the topic, but not tools available.

annotation genome operon • 2.8k views
ADD COMMENT
1
Entering edit mode
6.4 years ago
2351688559 ▴ 20

You can try DOOR 2.0 database

ADD COMMENT
0
Entering edit mode

This looks indeed interesting

ADD REPLY
0
Entering edit mode
7.3 years ago
jing ▴ 10

Have you tried Prodigal?

ADD COMMENT
0
Entering edit mode

well, as far as I know Prodigal is a Gene finder tool, not an operon finding tool.

ADD REPLY
0
Entering edit mode

Hi! I read your post about COG annotation and operon prediction. Now I 'm facing the same problem. Have you got your problems solved? I guess I may need your help! Thanks!

ADD REPLY
0
Entering edit mode

Hi, sorry for the late answer. I guess that looking at the questions on biostars you can find the answer you need. Otherwise you can open another post and I am sure you will get help.

ADD REPLY
0
Entering edit mode

Hi! How are you?

Have you got your operon predicted? Would you mind telling me what you are going to do with the predictions? I have got my predictions, but I have difficulties on how to analyze them.

Thank you!

ADD REPLY

Login before adding your answer.

Traffic: 568 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6