I am working with somatic mutations in prostate, I downloaded the MAF files + clinical data from TCGA and I installed MuSiC to work with them...however, I need bam or wig files. since I have no access to the bam files, I would like to get hold of the Wiggle files but I am not really sure where to find them/which ones to use...
also, wig files are still pretty big guys (i.e. wiggle files for some ChIPSeq data I worked with are >200Mb each...) ...so if I need to download 200Mb x 400 patients that's gonna be pretty challenging..any suggestions how to circumvent that?
any help would be great.