position range of loci
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9.0 years ago
yliueagle ▴ 290

A question that how can I obtain the position range of each locus from USCS Genome browser database (assembly GRCh37/hg19)? For example the position range of locus 2q36.3 is chr2:22610000 - 231000000

Assembly genome • 1.3k views
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Entering edit mode
9.0 years ago

You're looking for the "Cytobands.txt.gz" file. You can either find that on the ftp server, or use the table browser, where it's under Group: "Mapping and Sequencing", Track: "Chromosome band". There's also Track: "Chromosome band Ideo", which seems to only differ in that it contains random/unplaced contigs as well as standard ones.

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