Question: EdgeR output normalization?
0
gravatar for mahnazkiani
5.1 years ago by
mahnazkiani50
United States
mahnazkiani50 wrote:

I have mean count output data from 3 biological reps that I got from edgeR implanted in CLC, I'm interested to do network analysis using these mean count data, do I need to do normalization before that or they are already normalized with CalcNormFactors-method-TMM?

 

Thanks

 

     

 

rna-seq • 2.2k views
ADD COMMENTlink written 5.1 years ago by mahnazkiani50
2

You're already paying CLC large sums of money for their software, they'll answer the phone if you call and ask them this.

ADD REPLYlink written 5.1 years ago by Devon Ryan95k
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