Question: Domain Prediction Tool
0
gravatar for User 3325
8.3 years ago by
User 332580
User 332580 wrote:

Is there any tool which predict domain from sequence of novel protein?

domain prediction protein tool • 3.6k views
ADD COMMENTlink modified 8.3 years ago by Christian2.8k • written 8.3 years ago by User 332580
2

please try to get your nomenclature at least halfway right

ADD REPLYlink written 8.3 years ago by Michael Schubert6.9k
1

I agree with Michael (+1 above and below), but genes do have domains. Generally, gene domains, such as promoter, exon, intron, coding/non-coding, splice sites, etc. are either too general to require much of an algorithm or too esoteric to offer a complete and/or reliable prediction (eg, an entire promoter region). Add detail to your question to get a detailed, helpful answer.

ADD REPLYlink written 8.3 years ago by Larry_Parnell16k
1

I would guess (and I shouldn't have to) that unknown meant protein domains.

ADD REPLYlink written 8.3 years ago by Michael Dondrup47k
6
gravatar for Michael Schubert
8.3 years ago by
Cambridge, UK
Michael Schubert6.9k wrote:

hmmer, rpsblast

(just to keep the information content in the answer as low as in the question - improve the question, then I'll improve the answer)

ADD COMMENTlink written 8.3 years ago by Michael Schubert6.9k
2
gravatar for Michael Dondrup
8.3 years ago by
Bergen, Norway
Michael Dondrup47k wrote:

InterPro

ADD COMMENTlink written 8.3 years ago by Michael Dondrup47k

also: NCBI CDD http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi

ADD REPLYlink written 8.3 years ago by Michael Schubert6.9k
1
gravatar for Christian
8.2 years ago by
Christian2.8k
Cambridge, US
Christian2.8k wrote:

InterProScan http://www.ebi.ac.uk/Tools/pfa/iprscan/

ADD COMMENTlink written 8.2 years ago by Christian2.8k
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