Mapping Contigs based on Reference Genome

Question

[Tanvir Ahamed]

Hello everyone,

I have set of contigs form several bacterial genomes. Now I want to map and visualize those contigs based on a reference genome

Layout could be as follows:

Ref Genom      > [Whole Genome sequence]
Genom1          > [Set of contigs]
Genom2          > [Set of contigs]
............
Genom 10       > [Set of contigs]

Can anyone please help me, how I can achieve this type of analysis including mapping and visualize.

Thanks in advance.

Answer 1

[h.mon]

Two easy to use software for what you want are Mauve and BRIG.