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Question: Metabolic Interaction Network analysis
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gravatar for F
3.8 years ago by
F • 3.4k
Iran
F • 3.4k wrote:

hello,

i have a list of genes, with which tool i can draw cellular pathway and transcriptome interactions of my genes?? pathway studio is such a tool but it's commercial...I need to draw pathway diagrams showing the proteins involved in my interest network please
network analysis pathway • 1.4k views
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modified 3.8 years ago by michael.ante • 3.2k • written 3.8 years ago by F • 3.4k
4
gravatar for michael.ante
3.8 years ago by
michael.ante • 3.2k
Austria/Vienna
michael.ante • 3.2k wrote:

Hi Sarah,

for first impressions, I'd suggest the graphviz package for the command line. It arranges nodes and edges automatically in different flavours.

If you need something more fancy, try bioUML workbench (see here); I don't know if they changed their policy by now, but a couple of years ago it was freely available.

Cheers,

Michael
ADD COMMENT • link written 3.8 years ago by michael.ante • 3.2k

thank you Michael, i prefer something far from R then i am trying bioUML workbench right now

ADD REPLY • link written 3.8 years ago by F • 3.4k

try BioLayout Express, but ready the manual at first!!

ADD REPLY • link written 3.7 years ago by F • 3.4k
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