Question: Metabolic Interaction Network analysis
0
gravatar for A
4.2 years ago by
A3.5k
A3.5k wrote:

hello,

i have a list of genes, with which tool i can draw cellular pathway and transcriptome interactions of my genes?? pathway studio is such a tool but it's commercial...I need to draw pathway diagrams showing the proteins involved in my interest network please

network analysis pathway • 1.6k views
ADD COMMENTlink modified 4.2 years ago by michael.ante3.4k • written 4.2 years ago by A3.5k
4
gravatar for michael.ante
4.2 years ago by
michael.ante3.4k
Austria/Vienna
michael.ante3.4k wrote:

Hi Sarah,

for first impressions, I'd suggest the graphviz package for the command line. It arranges nodes and edges automatically in different flavours.

If you need something more fancy, try bioUML workbench (see here); I don't know if they changed their policy by now, but a couple of years ago it was freely available.

Cheers,

Michael

ADD COMMENTlink written 4.2 years ago by michael.ante3.4k

thank you Michael, i prefer something far from R then i am trying bioUML workbench right now

ADD REPLYlink written 4.2 years ago by A3.5k

try BioLayout Express, but ready the manual at first!!

ADD REPLYlink written 4.2 years ago by A3.5k
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