Question: Nussinov Algorithm That Traces All Possible Rna Secondary Structures
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gravatar for Angel
8.7 years ago by
Angel90
Angel90 wrote:

Hi Bostars!

Did anyone know any web server or a tool that implements nussinov algorithm that traces all possible RNA secondary structures with maximum number of base pair?

ADD COMMENTlink modified 5.7 years ago by Biostar ♦♦ 20 • written 8.7 years ago by Angel90
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All possible structures is exponentially large, you should define a smaller group

ADD REPLYlink written 8.7 years ago by Asaf8.3k
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gravatar for Michael Dondrup
8.7 years ago by
Bergen, Norway
Michael Dondrup47k wrote:

http://biowiki.org/view/Teaching/NussinovAlgorithmHomework

However, this algorithm is not very useful for real RNA other than for homework: see discussion Help With Nussinov'S Rna Folding Algorithm

ADD COMMENTlink modified 10 months ago by RamRS28k • written 8.7 years ago by Michael Dondrup47k
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