I would like to remove empty reads from fastq_file after trimming adapter sequencing.
This fastq is from 454 GS-FLX.
I tried to remove that using following fastx_clipper(in fastx_toolkit)
fastx_clipper -Q33 -l 1 -i in.fastq -o out.fastq
But I received following error message:
Segmentation fault (core dumped)
Anybody has solution about this problem? Other software can remove these empty reads?