Newbie - Reference Genome and R

Question

[berrysweetpie]

I have data containing the ORFs for several genes in Yeast and need the reference genome. I am very new to this and was wondering if I would be able to find a .csv format or some other file type that is easy to turn into a Genomic Ranges object.

[Parham]

which yeast?

[berrysweetpie]

Reference genome R64

[Parham]

I assume that means cerevisiae?

[berrysweetpie]

Yes, sorry for the lack of clarity.

Answer 1

[Parham]

You should be able to get what you are seeking wirth biomaRt package in R.

[Parham]

Also here http://bioconductor.org/packages/release/data/annotation/html/TxDb.Scerevisiae.UCSC.sacCer3.sgdGene.html

[zizigolu]

daaramet Parham