Question: linux error while functional annotation
gravatar for sharma_tina189059
3.7 years ago by
United States
sharma_tina18905950 wrote:

can anyone expalin this error in linux while using AutoFACT for COG assignment..


------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Could not open <fasta_file: No such file or directory
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl5/Bio/Root/
STACK: Bio::Root::IO::_initialize_io /usr/local/share/perl5/Bio/Root/
STACK: Bio::SeqIO::_initialize /usr/local/share/perl5/Bio/
STACK: Bio::SeqIO::fasta::_initialize /usr/local/share/perl5/Bio/SeqIO/
STACK: Bio::SeqIO::new /usr/local/share/perl5/Bio/
STACK: Bio::SeqIO::new /usr/local/share/perl5/Bio/
STACK: Utils::get_seqs_in_fasta_file /home/tina/Bioinfo_software/AutoFACT/modules/
STACK: /home/tina/Bioinfo_software/AutoFACT/scripts/
[tina@tom db_files]$


genome • 982 views
ADD COMMENTlink written 3.7 years ago by sharma_tina18905950

Looks like the input file you are specifying is not present, but I could be wrong.  

ADD REPLYlink written 3.7 years ago by Sean Davis25k

maybe the file permission issue or check the path of file as Sean said.

ADD REPLYlink written 3.7 years ago by Zhilong Jia1.4k
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