Question: linux error while functional annotation
0
gravatar for sharma_tina189059
4.1 years ago by
United States
sharma_tina18905950 wrote:

can anyone expalin this error in linux while using AutoFACT for COG assignment..

 

------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Could not open <fasta_file: No such file or directory
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/local/share/perl5/Bio/Root/Root.pm:486
STACK: Bio::Root::IO::_initialize_io /usr/local/share/perl5/Bio/Root/IO.pm:351
STACK: Bio::SeqIO::_initialize /usr/local/share/perl5/Bio/SeqIO.pm:491
STACK: Bio::SeqIO::fasta::_initialize /usr/local/share/perl5/Bio/SeqIO/fasta.pm:87
STACK: Bio::SeqIO::new /usr/local/share/perl5/Bio/SeqIO.pm:372
STACK: Bio::SeqIO::new /usr/local/share/perl5/Bio/SeqIO.pm:413
STACK: Utils::get_seqs_in_fasta_file /home/tina/Bioinfo_software/AutoFACT/modules/Utils.pm:341
STACK: /home/tina/Bioinfo_software/AutoFACT/scripts/AutoFACT.pl:60
-----------------------------------------------------------
[tina@tom db_files]$

 

genome • 1.0k views
ADD COMMENTlink written 4.1 years ago by sharma_tina18905950
1

Looks like the input file you are specifying is not present, but I could be wrong.  

ADD REPLYlink written 4.1 years ago by Sean Davis25k

maybe the file permission issue or check the path of file as Sean said.

ADD REPLYlink written 4.1 years ago by Zhilong Jia1.4k
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