I got Illumina data resulted from poly A-enriched libraries sequencing. I checked the probable rRNA contamination using SortMeRNA tool, there was 1.09% rRNA sequences. Before checking the rRNA contamination, I did transcriptome assembly and now I don't know if this contamination is significant or trivial. Could you please put your opinion about it, if the contamination is significant and I should make a new assembly with the clean (non-contaminated) data?
Thanks in advance,