Does anybody know of examples of phylogenetic tools of large data sets that use multicore processors?
I know of RAxML (http://hpseewiki.ipb.ac.rs/index.php/RAxML) but I would like to know of other examples, specially if they haven't been published yet but are released and ready to be tested.
+1 Great! Thanks.
With PhyML (compiled with the MPI option), it's the bootstrapping step that be parallelized. I didn't know about that PhyML+m3l fork.