I have two bed files (file 1 and file 2)....which have common SNPs along with chromosome numbers and regions. File 2 has few SNP ids (along with chromosome number, start and end sites) which are already in file 1.
I am a completely new entry into this field. I am told I can use Bedtools to combine the above files and write a command in UNIX to perform and create one single bed file with no repetitions.
May I please know what commands I should use to combine two bed files but with no common data set in the resulting bed file ?
I will eagerly wait for your kind reply.