I have a list of SNPs which I want to use to design a bait for Target Sequencing for each arm of a chromosome. However, I am wondering now how would I know which genes are covered in each regions of the chromosome !
Chromosome num Start End Num of SNPs
Chromosome 1 1 3000000 bp 85
How would I know which genes are actually in the above start and end region of the p arm of Chromosome 1 and how can I plot SNPs and genes together to show the information ? Or is it a separate plot for SNPs and Genes !
I will look forward for suggestions.