Question: DiscoSNP++ compilation problem
0
gravatar for tkitapci
3.6 years ago by
tkitapci60
United States
tkitapci60 wrote:

Hi,

I am getting this error:

bash-4.1$ ./compile_discoSnp++.sh
        Compiling discoSnp, from directory /home/cmb-02/sn1/tkitapci/software/DiscoSNP++-2.2.0-Darwin
mkdir: cannot create directory `build': File exists
CMake Error at CMakeLists.txt:25 (include):
  include could not find load file:

    GatbCore


CMake Error at CMakeLists.txt:64 (INCLUDE):
  include could not find load file:

    Delivery


-- Configuring incomplete, errors occurred!
See also "/home/cmb-02/sn1/tkitapci/software/DiscoSNP++-2.2.0-Darwin/build/CMakeFiles/CMakeOutput.log".
make: *** No targets specified and no makefile found.  Stop.


can anybody please help me with this ? Thanks!

Hamdi

snp • 955 views
ADD COMMENTlink modified 3.2 years ago by acros10 • written 3.6 years ago by tkitapci60

Try deleting the build directory.

ADD REPLYlink modified 3.6 years ago • written 3.6 years ago by kloetzl1.0k

That is not the problem. I am getting the exact same message "except the mkdir error" if I delete and run this. Thanks

ADD REPLYlink modified 3.6 years ago • written 3.6 years ago by tkitapci60
2

It seems that a cmake variable is not correctly set.

Could you add the following line in the CmakeLists.txt file of the main directory ? You can add it the line just after ENDFOREACH(path)

MESSAGE ("===> CMAKE_MODULE_PATH=${CMAKE_MODULE_PATH}")

and can you give the result of this line after launching the compile_discoSnp++.sh  script ?

ADD REPLYlink modified 3.6 years ago • written 3.6 years ago by edrezen720
0
gravatar for acros
3.2 years ago by
acros10
acros10 wrote:

Hi, I have the exact same error as the one from this thread. I wanted to know if this was ever solved?

Thanks,

Annick

 

ADD COMMENTlink written 3.2 years ago by acros10
0
gravatar for acros
3.2 years ago by
acros10
acros10 wrote:

Hi, I have the exact same error as the one from this thread. I wanted to know if this was ever solved?

Thanks,

Annick

 

ADD COMMENTlink written 3.2 years ago by acros10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1082 users visited in the last hour