DiscoSNP++ compilation problem
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7.3 years ago
tkitapci ▴ 60

Hi,

I am getting this error:

bash-4.1$ ./compile_discoSnp++.sh
        Compiling discoSnp, from directory /home/cmb-02/sn1/tkitapci/software/DiscoSNP++-2.2.0-Darwin
mkdir: cannot create directory `build': File exists
CMake Error at CMakeLists.txt:25 (include):
  include could not find load file:

    GatbCore

CMake Error at CMakeLists.txt:64 (INCLUDE):
  include could not find load file:

    Delivery

-- Configuring incomplete, errors occurred!
See also "/home/cmb-02/sn1/tkitapci/software/DiscoSNP++-2.2.0-Darwin/build/CMakeFiles/CMakeOutput.log".
make: *** No targets specified and no makefile found.  Stop.

Can anybody please help me with this? Thanks!

Hamdi

SNP • 1.7k views
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Try deleting the build directory.

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That is not the problem. I am getting the exact same message "except the mkdir error" if I delete and run this. Thanks

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2
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It seems that a cmake variable is not correctly set.

Could you add the following line in the CmakeLists.txt file of the main directory? You can add it the line just after ENDFOREACH(path)

MESSAGE ("===> CMAKE_MODULE_PATH=${CMAKE_MODULE_PATH}")

and can you give the result of this line after launching the compile_discoSnp++.sh script?

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Hi, I have the exact same error as the one from this thread. I wanted to know if this was ever solved?

Thanks,
Annick

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0
Entering edit mode

Hi, I have the exact same error as the one from this thread. I wanted to know if this was ever solved?

Thanks,
Annick

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