Is there any tool to do GO, EC, and KEGG annotation for transcriptome assembly?

Question

[seta]

Hi all,

I'm looking for a tool to do functional analysis (GO, EC, and KEGG annotation) of de novo assembled transcriptome generated from a non-model plant. Could you please share what you know about it? Please don't refer me to Trinotate or Annocript.

Thnaks

[EagleEye]

Tool: Gene Set Clustering based on Functional annotation (GeneSCF)

Steps for user defined database and input list: GO enrichment analysis using a Text file with all the genes and GO ids associated for a non model organism