Question: Is there any tool to do GO, EC, and KEGG annotation for transcriptome assembly?
0
gravatar for seta
4.8 years ago by
seta1.3k
Sweden
seta1.3k wrote:

Hi all,

I'm looking for a tool to do functional analysis (GO, EC, and KEGG annotation) of de novo assembled transcriptome generated from a non-model plant. Could you please share what you know about it? Please don't refer me to Trinotate or Annocript.

Thnaks

ADD COMMENTlink written 4.8 years ago by seta1.3k

Tool:

Gene Set Clustering based on Functional annotation (GeneSCF)

Steps for user defined database and input list:

A: GO enrichment analysis using a Text file with all the genes and GO ids associat

 

 

ADD REPLYlink written 4.8 years ago by EagleEye6.6k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1809 users visited in the last hour