Question: how i can extract needed gene list (txt) from a bed file
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gravatar for F
3.3 years ago by
F3.1k
Iran
F3.1k wrote:

hi,

i have three bed files (insertion, deletion and junction) in my tophat out put...i need to extract the genes as txt file by biophyconnector package...then which bed file i should use as input????

thanks

txt myposts bed biophysconnector • 1.4k views
ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by F3.1k
1

could you provide a little snippet of each please

ADD REPLYlink written 3.3 years ago by Vincent Laufer1000
Actually me myself also don know enough about the details just I know I want to divide the average number of reads per length of mrna from riboseq on the average number of reads from the rnaseq...I did rnaseq with tophat and in output I have such a file but for boiphysconnector I need sam files to be converted to the txt file each on for riboseq and rnaseq and a bed file for riboseq also I need but I donno which riboseq bed from tophat output I should use
ADD REPLYlink written 3.3 years ago by F3.1k
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