I have a list of enriched gene ontology (GO)- biological process terms. I am trying to avoid listing them as tables and looking for programs that summarizes the result as a nice publishable picture. So far, I find Revigo as the best program. It produces nice scatter plot as well as a tree view. Link: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0021800
I notice that some papers use programs like topGO, RamiGO and show the GO enrichment as a hierarchical tree structure. Is there any other programs that can summarize GO enrichment as a nice visually captivating picture?
I also found some nice visualization using gephi and bio4j.
Any other suggestions will be helpful.