Question: Determine which HUGO IDs are coding and non-coding
0
gravatar for jolespin
3.5 years ago by
jolespin120
United States
jolespin120 wrote:

I have a giant list of HUGO identifiers.  Is there any tool in Python or some webserver (preferably python) that could tell me if it's coding or non-coding? 

ADD COMMENTlink modified 3.5 years ago by Neilfws48k • written 3.5 years ago by jolespin120
2
gravatar for Pierre Lindenbaum
3.5 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum119k wrote:

see http://www.genenames.org/cgi-bin/statistics

 

protein-coding ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/locus_groups/protein-coding_gene.txt

non-coding RNA : ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/locus_groups/non-coding_RNA.txt

 

ADD COMMENTlink written 3.5 years ago by Pierre Lindenbaum119k
0
gravatar for Neilfws
3.5 years ago by
Neilfws48k
Sydney, Australia
Neilfws48k wrote:

You could use the HGNC REST service. For example:

http://rest.genenames.org/fetch/symbol/ZNF3

Then parse for locus_type = "gene with protein product".

They also have a BioMart service.

ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by Neilfws48k
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