Question: How to download time series expression datasets?
1
gravatar for Andrea
5.3 years ago by
Andrea50
Sweden
Andrea50 wrote:

Hello

i m trying to find time series expression datasets for canser. Right now im searching in GEO and Arrayexpress, but my knowledge on how to use the databases are limited. Can somenone give a link?  Also what is the downloadable type of these datasets? (Looking for tabular data document type that can be opened with excel and then inserted on Matlab)

I 'll aprecciate any suggestion! Thanks in advance!

 

ADD COMMENTlink modified 5.3 years ago by roy.granit840 • written 5.3 years ago by Andrea50
1
gravatar for roy.granit
5.3 years ago by
roy.granit840
Israel/LabWorm
roy.granit840 wrote:

You can checkout the TCGA data portal or the Cancer genome browser (where you can easily download such data). One can also tap into this data right from MatLab http://www.cbioportal.org/cgds_r.jsp

--

Comment: Opps. just noticed you're looking for "time-series" data, not sure what you mean by this..

ADD COMMENTlink modified 15 months ago by Ram32k • written 5.3 years ago by roy.granit840

Isn't it out there data derived from monitoring the change in expression patterns over time? From this video i assume that i need a file like this one . I tried to use it just for practise, but this particular file is not traceable anymore. So i have to learn how to trace such files. Still searching though.. thanks!

ADD REPLYlink modified 5.3 years ago • written 5.3 years ago by Andrea50
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2124 users visited in the last hour
_