Fa list for illumina sequencing adapters

Question

[Shicheng Guo]

Hey my colleagues,

Who has the fa file for all the illumina sequencing adapter sequences.

Such as:

>TruSeq_Universal_Adapter
AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
>TruSeq_Adapter_Index 1-64
GATCGGAAGAGCACACGTCTGAACTCCAGTCACNNNNNNATCTCGTATGCCGTCTTCTGCTTG

Thanks!

Answer 1

[h.mon]

Very extensive documentation here. You will find fasta files with the adapters distributed along several popular software, for example FastQC and BBTools - just download the packages and browse the files.

[Shicheng Guo]

Thanks. I have got the list from FastQC:

./FastQC/Configuration/adapter_list.txt
./FastQC/Configuration/contaminant_list.txt