Question: Finding genes involved in the KEGG pathway
0
gravatar for seta
3.4 years ago by
seta1.1k
Sweden
seta1.1k wrote:

Hi everybody,

I have used KAAS for KEGG annotation of transcriptome assembly, as you may know, it assigned the KO number to the related contigs and showed the related pathways, where existing ortholog (contigs) in the pathway colored in green boxes, however, there is no information which contig (gene) has corresponded to each green box. I asked this issue from KEGG support and they told me that the information could be obtained using programming from xml files at http://www.kegg.jp/kegg/xml/. Could you please help me out on this regard?

Thanks in advance. 

ADD COMMENTlink modified 3.4 years ago • written 3.4 years ago by seta1.1k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 979 users visited in the last hour