Question: Finding genes involved in the KEGG pathway
gravatar for seta
4.8 years ago by
seta1.4k wrote:

Hi everybody,

I have used KAAS for KEGG annotation of transcriptome assembly, as you may know, it assigned the KO number to the related contigs and showed the related pathways, where existing ortholog (contigs) in the pathway colored in green boxes, however, there is no information which contig (gene) has corresponded to each green box. I asked this issue from KEGG support and they told me that the information could be obtained using programming from xml files at Could you please help me out on this regard?

Thanks in advance. 

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