coordinates for Transposable Elements
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6.0 years ago
kanwarjag ★ 1.1k

I have to plot a fig similar to Fig 2 of http://www.pnas.org/content/112/44/13729.abstract

I was wondering how can get TE cordinate of ,ouse genome. There are various sources which can give me coordinate of TSS but dont know if have similar resources for TE also. Any pointers please

 

I want to take 2KB across TE and 2 KB downstream of TSS to generate such figure

TSS TE • 1.4k views
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6.0 years ago

You can get the coordinates from Ensembl, they are found under repeats. How to find transposable element genes in ensembl annotation

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