Easiest way to convert python script to web application
2
3
Entering edit mode
6.9 years ago
Pappu ★ 2.1k

I have written many python scripts/programs for various bioinformatics purposes. I am wondering what would be the easiest way to convert them to web application in order to make them more accessible to wet lab biologists.

Basically there will be input file containing sequences or parameters and output file containing the results. I am thinking about the Flask framework.

python • 14k views
ADD COMMENT
2
Entering edit mode

Here is your answer: https://www.djangoproject.com/

ADD REPLY
4
Entering edit mode
6.9 years ago
Ido Tamir 5.2k

Set up a galaxy server (https://usegalaxy.org/). Add your tools to this galaxy instance (https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial). The biologists will get your tools + many other useful tools to build complete analysis pipelines and analyze their data in a reproducible way.

ADD COMMENT
3
Entering edit mode
6.9 years ago
kautilya ▴ 430

You could use Wooey. Its a simple framework to convert you python command-line scripts into web applications.

Also if you want to create a simple desktop application directly from your python scripts you could use Gooey.

ADD COMMENT

Login before adding your answer.

Traffic: 1270 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6