Question: Detect CNVs in single sample using cn.MOPS
gravatar for win
3.5 years ago by
win810 wrote:

Hi all,

Using cn.MOPS for CNV detection and it requires optimally 6 samples (6 BAM files) to effectively run the analysis. I am generating CNV plots for each chromosome but I believe it outlines the CNVs for all samples.

What I want is generate plots for CNVs detected in any one sample i.e. generate CNV plots for every chromosome for any sample. How can that be done?

Thanks in advance.

cnv cn.mops • 1.4k views
ADD COMMENTlink modified 19 months ago by colindaven1.6k • written 3.5 years ago by win810

There are many other CNV tools that can fetch you graphs on the basis of chromosome, gene and individual sample. some are as follows: ControlFREEC ONCOCNV Cnvkit

ADD REPLYlink written 19 months ago by mittu1602160
gravatar for colindaven
19 months ago by
Hannover Medical School
colindaven1.6k wrote:

Why not use "related" public data from the same species using the NCBI SRA / EBI ENA (to get fastq).

ADD COMMENTlink written 19 months ago by colindaven1.6k
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