Question: Detect CNVs in single sample using cn.MOPS
0
gravatar for win
4.4 years ago by
win820
India
win820 wrote:

Hi all,

Using cn.MOPS for CNV detection and it requires optimally 6 samples (6 BAM files) to effectively run the analysis. I am generating CNV plots for each chromosome but I believe it outlines the CNVs for all samples.

What I want is generate plots for CNVs detected in any one sample i.e. generate CNV plots for every chromosome for any sample. How can that be done?

Thanks in advance.

cnv cn.mops • 1.7k views
ADD COMMENTlink modified 2.5 years ago by colindaven2.2k • written 4.4 years ago by win820

There are many other CNV tools that can fetch you graphs on the basis of chromosome, gene and individual sample. some are as follows: ControlFREEC ONCOCNV Cnvkit

ADD REPLYlink written 2.5 years ago by mittu1602180
0
gravatar for colindaven
2.5 years ago by
colindaven2.2k
Hannover Medical School
colindaven2.2k wrote:

Why not use "related" public data from the same species using the NCBI SRA / EBI ENA (to get fastq).

ADD COMMENTlink written 2.5 years ago by colindaven2.2k
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