I am looking for data which contains somatic allele frequency obtains from many tumor.
For exemple, something like:
chromosom pos ref alt AF
using TCGA website, it seems they only provide data per sample. Any Idea where I can find this data ?
#EDIT
I want to get data for non-coding dna, from any location in the genom
Thanks !
It seems it's exactly what I need !
And is there a way to download all data for the complete human genom ?
Because it seems, I can download data only for defined genes. What about non coding dna ?
Ok, cBioPortal is greate! But I want the same data for non-coding dna! That's mean, I give a location and I get the AF in the same way that for coding genes.
I have posted answer in case you want (Somatic) mut. that are affecting non-protein coding region of the transcriptome.