Processing Order of the trim_galore

Question

[Shicheng Guo]

Hi,

Anybody know the processing order of the trim_galore?

1. quality trim
2. adaptor trim
3. 3' and 5' clip

Thanks

Answer 1

[h.mon]

Read the section "Adaptive quality and adapter trimming with Trim Galore!" on Trim Galore user guide, it should answer your question.