I am usually asked if I can show the overlap between peaks in ChIP-seq studies using a venn diagram. However a venn diagram supposes the relationship is 1:1, where as a single peak in one sample could overlap multiple peaks in another sample. My question is how do you normally calculate the amount of peak overlap and how do you prefer to visualise/summarise this overlap?
Question: Visualising the number of overlapping peaks in ChIP-seq studies
3.4 years ago by
James Ashmore • 2.6k
UK/Edinburgh/MRC Centre for Regenerative Medicine
James Ashmore • 2.6k wrote:
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