NGS alignment image drawing
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6.6 years ago
Raygozak ★ 1.4k

Hi, Does anyone know how can I draw programmatically a region of a bam alignment to a png image? I want to do this to examine several bam alignments at a time.

Thanks

bam ngs • 1.8k views
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Because this sounds a lot like what a genome browser does (IGV, USCS, etc) could you define what your png should look like that differs from a genome browser screen shot?

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Hi,

You can do this using Gviz R package.

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5.0 years ago
h.mon 34k

Recently posted (hence my late answer): https://github.com/stevekm/IGV-snapshot-automator

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