i have 744 sequence and i have to use software algpred suggest some perl script that can be helpful to read multiple fasta sequence
And your question is...
Sounds like you want a shell script.
Bio::DB::Fasta - Bioperl module to read multiple fasta sequences.
Here is a link to the beginners HOWTO on the Bioperl wiki. It gives you an introduction to the sequence and seqIO objects. If you learn these you can do pretty much anything in terms of basic fasta parsing/manipulation
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