Question: Well-defined subtypes of cancers in TCGA database
0
gravatar for Na Sed
3.1 years ago by
Na Sed280
United States
Na Sed280 wrote:

I need data for some cancers which include well-defined subtypes/groups and be available in TCGA. I do know for BRCA we have such well-defined groups using status of BRCA and HER2 which are included in clinical data. Do you know if there are some cancers like BRCA with such complete info for grouping tumor samples in TCGA?

subtype tcga • 1.6k views
ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by Na Sed280
1

Head and neck squamous cell carcinomas: http://www.nature.com/nature/journal/v517/n7536/full/nature14129.html

ADD REPLYlink modified 3.1 years ago • written 3.1 years ago by genomax65k

Hi

I am working with BRCA data, but unable to find the subtypes/groups available in TCGA data that you have already mentioned in your post. will you please help to find this. Or else how shall i find this information? Hope you will help

Thanks Ashmita

ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by Ashmita0

Already answered in your other post: To know the breast cancer subtypes and molecular types from TCGA data

ADD REPLYlink modified 2.1 years ago • written 2.1 years ago by genomax65k

Hi Ashitma,

In TCGA database, clinical data including several txt files are available and you can download them. In one of the file, you can find subtypes (sorry, currently I do not remember which file includes this info).

ADD REPLYlink written 2.1 years ago by Na Sed280
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