I was trying to get WGS MAF files from TCGA. I was going through this wonderful post here at Working with MAF files (Mutation Annotation Format) from the TCGA (The Cancer Genome Atlas) and it looks like TCGA does not have WGS MAF. as mentioned in above link by Cyrius that "Almost everything in the TCGA MAFs are from targeted exome sequencing. 50 of the 200 LAML tumors were whole-genome sequenced, and the putative calls were targeted with custom capture arrays" . So seems that TCGA doesn't have WGS MAF files for all tumors type at all. Even this link https://confluence.broadinstitute.org/display/GDAC/MAF+Dashboard of FireHose says that " All MAFs on this page are exome only. We do not provide whole genome MAFs."
Could someone please help me in finding repository for Somatic WGS MAF files for different type of cancer.