Question: problem with using CuffMerge in Galaxy
0
gravatar for nazaninhoseinkhan
3.0 years ago by
Iran, Islamic Republic Of
nazaninhoseinkhan360 wrote:

Dear all,

I want to find differential expressed genes between two RNASeq samples in Galaxy.

I want to use CuffMerge to merge assembled transcripts produced by Cufflinks.

In the first box the list of all Cufflinks output is shown(when I choose multiple datasets), but when I choose the option to import additional gtf file , it is empty and says me there is nothing to show.

Can you help me find the problem

Thank you in advance

Nazanin

cuffmerge galaxy rnaseq • 985 views
ADD COMMENTlink modified 3.0 years ago by Jennifer Hillman Jackson370 • written 3.0 years ago by nazaninhoseinkhan360
1

Please post this on the Galaxy help site.

ADD REPLYlink written 3.0 years ago by Devon Ryan90k

Hi Nazanin,

I'm facing the same problem when I used Cuffmerge in galaxy. Could you tell me how to fix this problem? Thanks.

Best, Cassie

ADD REPLYlink written 2.2 years ago by mingaolele0
1
gravatar for Jennifer Hillman Jackson
3.0 years ago by
Bay Area, CA
Jennifer Hillman Jackson370 wrote:

Thanks Devon!

For any interested, follow the post here: https://biostar.usegalaxy.org/p/17618/

Jen, Galaxy team

ADD COMMENTlink written 3.0 years ago by Jennifer Hillman Jackson370
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