Question: problem with using CuffMerge in Galaxy
gravatar for nazaninhoseinkhan
4.4 years ago by
Iran, Islamic Republic Of
nazaninhoseinkhan410 wrote:

Dear all,

I want to find differential expressed genes between two RNASeq samples in Galaxy.

I want to use CuffMerge to merge assembled transcripts produced by Cufflinks.

In the first box the list of all Cufflinks output is shown(when I choose multiple datasets), but when I choose the option to import additional gtf file , it is empty and says me there is nothing to show.

Can you help me find the problem

Thank you in advance


cuffmerge galaxy rnaseq • 1.3k views
ADD COMMENTlink modified 4.4 years ago by Jennifer Hillman Jackson390 • written 4.4 years ago by nazaninhoseinkhan410

Please post this on the Galaxy help site.

ADD REPLYlink written 4.4 years ago by Devon Ryan96k

Hi Nazanin,

I'm facing the same problem when I used Cuffmerge in galaxy. Could you tell me how to fix this problem? Thanks.

Best, Cassie

ADD REPLYlink written 3.5 years ago by mingaolele0
gravatar for Jennifer Hillman Jackson
4.4 years ago by
Bay Area, CA
Jennifer Hillman Jackson390 wrote:

Thanks Devon!

For any interested, follow the post here:

Jen, Galaxy team

ADD COMMENTlink written 4.4 years ago by Jennifer Hillman Jackson390
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