I found this tutorial pretty interesting, so I put the link to share :)
Thanks at god didn't need to have a heavy pc to be able to do it (I just crashed my head with the code...and make work Phyton...)...so I got my unmmaped reads, pretty interesting get herpesvirus on first place (was suppose to be like that) and curiosity Variola appears in second place. Sadly cant do this with RNA virus like hepatitis C, for that if I'm not wrong I need RNA seq
Well I'm just curious, someone has seen the infected virus on top of the list from an individual with a know disease like for sample HIV and isn't with ARV medication? Isn't any place where I could down a bam file from an known infected individual???
I found another interesting program like Virus Finder, this one seek for virus into the genome if Im not wrong, but can take around 3 day...with my pc probably one week ;_; Has someone try it? I will do when finish with my SNP calling, will take a while XD
(sorry for my bad english)