Question: Getting a list of genes expressed
0
gravatar for snp87
2.3 years ago by
snp8740
snp8740 wrote:

Hello! I am trying to look at genes that are expressed in a population of cells without comparing to another cell's transcriptomic data (obtained through RNAseq). Does anyone have any suggestions for which tool might be best to get a list of genes that are expressed sorted according to expression level?

Thanks!

transcriptome rna-seq • 521 views
ADD COMMENTlink modified 2.3 years ago by Devon Ryan86k • written 2.3 years ago by snp8740

I guess use edgeR and perform a cutoff on the CPM

ADD REPLYlink written 2.3 years ago by Nicolas Rosewick6.9k
1
gravatar for Devon Ryan
2.3 years ago by
Devon Ryan86k
Freiburg, Germany
Devon Ryan86k wrote:

Have a look at the zFPKM paper, since that's a method directly for this.

ADD COMMENTlink written 2.3 years ago by Devon Ryan86k
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