AFIK, Short sequencing and short pairwise sequencing generated by next-generation-sequencing is common now-a-days and there exists several alignment tools for them.
But I want to ask about long pairwise sequencing. There exists some alignment tools for long sequences like rHAT. That means there is at least one tool which generates long reads.
Now, I am asking that is there any tool which generates Long Pairwise Reads? if yes, then is there exist any aligner or mapper for that? Give me some idea about it.
Thanks in advance.