Entering edit mode
6.4 years ago
cristina_sabiers ▴ 110
Which tools I can use to annotate for example the Homo_sapiens.gene_info.gz on my vcf file? I asume I must focus on Symbol (gene) to annoate the rest of values, I tried few things but no lucky :(
how about 'just' using VEP or SNPEFF to get the gene name?
Use information from Homo_sapiens.gene_info.gz to annotate your vcf file? Anything special about this file? Is snpEff not acceptable?
I dont know how to answer both at same time, so I post it here, hope its ok.
well I must say I just know how to annotate clinvar and gen.bed file, I tried this
I m not just interested on the gene, more like in Nomenclature_status Other_designations....